'eHarmony for pathogens': How to catch an outbreak before it becomes a public health nuisance

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Australian authorities compare genome sequences stored in a national database to trace the origins of coronavirus outbreaks. Here's how that works.

Each night, AusTrakka generates a phylogenetic tree — a branched diagram that shows how different SARS-CoV-2 genetic sequences are related.

Sequences that are more genetically distinct sit further apart on the tree, signifying their arrival from other regions. "We could not find a match anywhere in the country that might explain the source of this disease," Professor Howden said.

 

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👏 to all labs involved ICPMR NSWHPathology, FSS AmyVJennison qldhealthnews , SA Pathology lexleong, ACT Pathology, ESRNewZealand Joepdl RDH EllaMeumann, PathWest, RHH, MDU PHL UniMelbMDHS Dr_Patiyan torstenseemann drandersgs

CDGN_Australia This is only possible because of the contributions from all the CDGN public health laboratories across Australia and New Zealand. Hats off to everyone doing the hard work in generating, uploading and analysing the genomic data 🧬👩‍💻👨‍🔬

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