Epitope binning-seq: A game-changer in antibody drug discovery

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Pancreatic Cancer,Pharmacology,Epigenetics

Antibody drug discovery is an extremely laborious and tedious process. Epitope Binning-seq, a novel method, introduces a groundbreaking approach by enabling simultaneous analysis of multiple antibodies.

Using a fluorescently labeled reference antibody , this method employs flow cytometry to identify similar epitope-binding query antibodies . Next-generation sequencing of fluorescence-negative cells then groups qAbs with epitopes akin to the rAb into epitope bins. This innovative technique holds immense potential in enhancing antibody drug discovery process.

In this study, query antibodies displayed on the surface of cells expressing HER2 were employed. By introducing fluorescently labeled reference antibodies and using flow cytometry analysis, researchers could distinguish between cells where the qAbs masked the epitopes and cells where they did not. Some qAbs effectively blocked the binding of rAb to the antigen, resulting in a population of cells with no rAb binding, termed the rAb-negative population.

The benefits of this platform are significant. Epitope Binning-seq streamlines epitope comparison, enabling rapid identification of antibodies with similar binding patterns, potentially advancing targeted and effective antibody-based therapies. The method's large-scale evaluation can transform antibody characterization, making it possible to assess millions of qAbs simultaneously.

The blood-brain barrier blocks the entry of antibodies into the brain. This limits the potential use of antibody therapeutics to treat brain diseases, such as brain tumors. Elsewhere in the body, ...

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