Ramp Atlas: facilitating tissue and cell-specific ramp sequence analyses through an intuitive web interface

Heat map of percentage of SARS-CoV-2 ramp sequences shared between tissues. The percentage of ramp sequences in SARS-CoV-2 genes that are present in both tissues being compared. Calculated using the consensus dataset. The redder the tissue comparison, the smaller the percentage of ramp sequences were present in both tissues. The bluer the comparison, the higher percentage of shared ramp sequences.Heat map of percentage of SARS-CoV-2 ramp sequences shared between tissues.

Users can interactively query Tableau charts on the ‘SARS-CoV-2’ page of The Ramp Atlas to thoroughly explore ramp sequences within the SARS-CoV-2 genome as well as in seven human entry factors for SARS-CoV-2. An interactive heat map at the top of the page shows the percentage of SARS-CoV-2 ramp sequences that are shared between different tissues in the consensus dataset.

. To run ExtRamp Online, users can either paste a FASTA formatted gene header and sequence into a text box or upload a small FASTA file of coding sequences. The FASTA file must contain only coding sequences , and the coding sequences must contain all codons from the start codon to the stop codon, inclusively.

United States Latest News, United States Headlines

Similar News:You can also read news stories similar to this one that we have collected from other news sources.

Man walking on I-8 on-ramp struck by vehicle, killedThe crash happened on the Waring Road on-ramp to west Interstate 8
Source: sdut - 🏆 5. / 95 Read more »

Atlas of Peculiar Galaxies: Strong-Arming a GalaxyThe pumped-up arm of the lopsided spiral galaxy NGC 772 dominates this image captured by the international Gemini Observatory, a Program of NSF's NOIRLab. The overdeveloped spiral arm of the galaxy NGC 772, which was formed by tidal interactions with an unruly neighbor, dominates this observation
Source: SciTechDaily1 - 🏆 84. / 68 Read more »

AEW's Jake Atlas' Domestic Violence Case DroppedTMZ Sports has learned the domestic violence case against AEW's Jake Atlas has been dropped.
Source: TMZ - 🏆 379. / 59 Read more »

Man walking on I-8 on-ramp struck by vehicle, killedThe crash happened on the Waring Road on-ramp to west Interstate 8
Source: sdut - 🏆 5. / 95 Read more »

How France ramped up its capacity to innovatePresident Emmanuel Macron wants France to become a ‘start-up nation’, fuelled by industry–academia collaborations. How is it faring?
Source: Nature - 🏆 64. / 68 Read more »

How to make spatial maps of gene activity — down to the cellular levelComputational and experimental methods are bringing researchers closer to their goal of revealing exactly where in a cell or tissue each gene is expressed.
Source: Nature - 🏆 64. / 68 Read more »